arXiv:2605.20425v1 Announce Type: new
Abstract: Designing multi-agent workflows is especially difficult in open-ended scientific settings where tasks lack curated training sets, reliable scalar evaluation metrics, and standardized interfaces between existing tools and agents. We propose AgentCo-op, a retrieval-based synthesis framework that composes reusable skills, tools, and external agents into executable workflows through typed artifact handoffs, then applies bounded self-guided local repair to implicated components when execution evidence indicates failure. In two open-world genomics case studies, AgentCo-op composes independently developed scientific agents and external tool repositories into auditable workflows without redesigning them or running global topology search. It coordinates specialized agents for spatial transcriptomics and gene-set interpretation to enable collaborative discovery from spatial transcriptomics data, and builds a parallel workflow for cross-modality marker analysis on single-cell multiome data. AgentCo-op can also import a searched workflow as a structural prior and improve it by grounding nodes with retrieved components and applying local repair, showing that synthesis and search are complementary. On six coding, math, and question-answering benchmarks, AgentCo-op achieves the best result on four benchmarks and the best average score under a unified backbone setting, while consistently reducing per-task cost relative to multi-agent baselines. Together, these results suggest that retrieval-based synthesis can extend automated agentic workflow design beyond benchmark-optimized agent graphs to open-world workflows built from existing agents, tools, and typed artifacts.

arXiv:2605.20467v1 Announce Type: new
Abstract: Neural networks can be trained to rank the choices made by logical reasoners, resulting in more efficient searches for answers. A key step in this process is creating useful embeddings, i.e., numeric representations of logical statements. This paper introduces and evaluates several approaches to creating embeddings that result in better downstream results. We train embeddings using triplet loss, which requires examples consisting of an anchor, a positive example, and a negative example. We introduce three ideas: generating anchors that are more likely to have repeated terms, generating positive and negative examples in a way that ensures a good balance between easy, medium, and hard examples, and periodically emphasizing the hardest examples during training. We conduct several experiments to evaluate this approach, including a comparison of different embeddings across different knowledge bases, in an attempt to identify what characteristics make an embedding well-suited to a particular reasoning task.

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